Users' questions

What can I open a MOL file with?

What can I open a MOL file with?

The Avogadro software can be used in Microsoft Windows based systems, Linux and Mac OS to access and view MOL files.

How do I open a .MOL file file?

If you don’t have the software in which your MOL file was created on your PC, you may be able to open it by setting your default file associations to open MOL files in a similar program, such as Easy Palette Object Library, or MDL Molfile Molecule File, or any other software that uses MOL files.

What is mol software?

Middle of life (MOL), in the context of manufacturing and product lifecycles, is the segment of a product’s existence in which it is established in the marketplace. For successful products, the MOL stage is the one that lasts longest.

How do I download a MOL file?

write on google the ligand name with the key words MOL file (for example: alpha-terpineol MOL file) click on the first link (in general ChemicalBook website) you’ll find the database file of the compound. Click on its mol file and it will be downloaded.

What is MOL2?

A MOL2 file contains information about a molecule model saved in the SYBYL MOL2 format. It stores multiple records, such as MOLECULE, ATOM, BOND, SUBSTRUCTURE, and SET, along with 3D coordinates specifying the structure of atoms within a protein or other chemical compound. MOL2 files are similar to . MOL files.

What MOL means?

The mole (symbol: mol) is the base unit of amount of substance in the International System of Units (SI). It is defined as exactly 6.02214076×1023 elementary entities (“particles”), which may be atoms, molecules, ions, or electrons.

How do I get a PDB file from Ligand?

Choose a Query type: PDB IDs Paste the ids and Click on Display / Download to download the data. Once you download the PDB files. You can use a small perl / shell / grep script to extract ligand information. Ligand information is provided with HETATM header and you can easily grep in the following format.

What are Mol2 files?

A Tripos Mol2 file (. mol2) is a complete, portable representation of a SYBYL molecule. It is an ASCII file which contains all the information needed to reconstruct a SYBYL molecule. Mol2 files are written out in a free format to avoid the restrictions created by fixed format files.

How do I view an SDF file?

You can use a free SQL database program called Pervasive PSQL to view SDF files.

  1. Download and install Pervasive PSQL.
  2. Click “Start” on from the bottom-left of your screen.
  3. Click “File” from the top-menu in PSQL, and then click “Open.”
  4. Click the desired SDF file, and then click “Open.”

How do I download a MOL2 file?

Downloading batch file

  1. Go to the download page of the ZINC database.
  2. There you can see multiple options to download such as drug-like, lead-like, clean, and so on.
  3. Select an appropriate category according to your work and download it by clicking on it.
  4. Download in MOL2 or SDF format.

How to open .mol file?

Right click on the unknown MOL file you want to open

  • Select “Open with” from the menu
  • Click “Choose another application”
  • Click “More applications”
  • Click “Find more applications on this PC” and indicate the installation location of the appropriate program
  • What is mol format?

    An MDL Molfile file is stored in the MOL format and is affixed with MOL file extension and is used by Symyx and Accelrys . These MOL files are generally classified as data files that contain molecular data information, atom, bonds, coordinates and connectivity information in plain text format.

    What are the different types of data files?

    A data file differs from a program file; while program files feature executable program code, data files store data that can be called up by an application. Types of data files number in the hundreds. Common extensions include .xls, which refers to a Microsoft Excel® spreadsheet, and .efx, usually an eFax document.

    What are computer file formats?

    A file format is the structure of how information is stored (encoded) in a computer file. File formats are designed to store specific types of information, such as JPEG and TIFF for image or raster data, AI (Adobe Illustrator) for vector data, or PDF for document exchange.